PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07759.20
Common NameJCGZ_27017, LOC105630342
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 183aa    MW: 20738.1 Da    PI: 7.1792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07759.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18755254
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                   +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Jcr4S07759.20  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                   69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-34666No hitNo description
SMARTSM003805.4E-41770IPR001471AP2/ERF domain
PfamPF008472.0E-11756IPR001471AP2/ERF domain
PROSITE profilePS5103221.127764IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-34764IPR001471AP2/ERF domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARQQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR  60
TNFPYNPNEP QSSSSKLLSA TLAAKLHKCH MASLQVTKNK NVNKQTHNDQ AQYCKPFDTS  120
NGIAGKSIET SFSWPEGDWV GEESQVGNSQ GQEFKALEDH HIEQMIEELI DYGSMEFCSA  180
SST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17868667ATERF1
3gcc_A2e-17868667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067539.11e-139PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-72ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A067LD251e-138A0A067LD25_JATCU; Uncharacterized protein
STRINGPOPTR_0001s14720.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.17e-40ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]